Hepatitis B Virus Regulatory Sequence Database (HBVRegDB)

           

 

 

 

Alignments

 
 

Reference alignments

Multiple Sequence Alignments

 

Hepatitis B virus (HBV)

HBV alignment of reference sequences with additional representative sequences, HBVRegDB group

Unaligned multifasta format, HBV_HBVRegDB_32.fasta
Aligned MSF format, HBV_HBVRegDB_32.msf

AlignX format, HBV_HBVRegDB_32.apr for VectorNTI 10
This has the features/annotation from both HBV Genotype A (AM282986) and C (NC_003977) annotated on the alignment.

Geneious format, HBV_HBVRegDB_32.geneious for Geneious
This has the features/annotation from both HBV Genotype A (AM282986) \ and C (NC_003977) annotated on the alignment.

(Alignment as pdf file)

 


Dendrogram
Hominid HBV (HHBV)

HHBV alignment used in Firth and Brown BMC Bioinformatics 2006 using Code2aln

Unaligned multifasta format, HHBV_HBVRegDB_21.fasta
Aligned MSF format, HHBV_HBVRegDB_21.msf

 

Orthohepadnaviridae (OHV)

OHV alignment used by Stocsits et al using Code2Aln

Unaligned multifasta format, OHV_HBVRegDB_12.fasta
AlignX screen
Aligned MSF format, OHV_HBVRegDB_12.msf

 

Avihepadnaviridae alignment (AHV)

Representative avian genomes

Unaligned multifasta format, AHV_HBVRegDB_5.fasta
Aligned MSF format, AHV_HBVRegDB_5.msf