Hepatitis B Virus Regulatory Sequence Database (HBVRegDB)

           

Showing 3.215 kbp from NC_003977M:Hepatitis B virus, RefSeq genotype C, modified for HBVRegDB. The data will take a while to load, positions 1 to 3,215

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recenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterDefinition line:  NC_003977M:1..3215Definition line: GenBank:contig:NC_003977M:1:3215 NC_003977M:1..3215CDS: HBVgp1.t01 NC_003977M:1..1623CDS: HBVgp1.t01 NC_003977M:2307..3215CDS: HBVgp2.t01 NC_003977M:2848..3215CDS: HBVgp2.t01 NC_003977M:1..835CDS: HBVgp2.t02 NC_003977M:3205..3215CDS: HBVgp2.t02 NC_003977M:1..835CDS: HBVgp2.t03 NC_003977M:155..835CDS: HBVgp3.t01 NC_003977M:1374..1838CDS: HBVgp4.t01 NC_003977M:1814..2452CDS: HBVgp4.t02 NC_003977M:1901..2452ORFs (open reading frames).: ORF 0.end NC_003977M:1..1620ORFs (open reading frames).: ORF 0.start NC_003977M:2307..3215ORFs (open reading frames).: ORF 1.end NC_003977M:1..832ORFs (open reading frames).: ORF 1.start NC_003977M:2713..3215ORFs (open reading frames).: ORF 2 NC_003977M:421..1620ORFs (open reading frames).: ORF 3 NC_003977M:155..832ORFs (open reading frames).: ORF 4 NC_003977M:1814..2449ORFs (open reading frames).: ORF 5 NC_003977M:1374..1835regulatory_region:  NC_003977M:1644..1666regulatory_region: Sequence:C NC_003977M:1851..1904regulatory_region: Sequence:X NC_003977M:1252..1348regulatory_region: Sequence:X NC_003977M:1151..1684TATA_box: C NC_003977M:1790..1793PolyA_site:  NC_003977M:1930..1930PolyA_site: C
 NC_003977M:1930..1930primer_binding_site:  NC_003977M:1824..1834primer_binding_site:  NC_003977M:1590..1600protein_binding_site: X NC_003977M:1088..1105protein_binding_site: X NC_003977M:1275..1291protein_binding_site: X NC_003977M:1150..1162enhancer:  NC_003977M:1644..1777enhancer: S
 NC_003977M:950..1310Promoter_prediction: C
 NC_003977M:1403..1626Promoter_prediction: C
 NC_003977M:1520..1576Promoter_prediction: C
 NC_003977M:1626..1775Promoter_prediction: C NC_003977M:1403..1455Promoter_prediction: S1
 NC_003977M:2710..2800Promoter_prediction: S2
 NC_003977M:2960..3180Promoter_prediction: X
 NC_003977M:950..13503-frame translation (forward): NC_003977M NC_003977M:1..3215Plot of conservation beyond what is expected from the aligned CDS (CDS-Plotcon): 15_nt_running-mean NC_003977M:1..3213Mountain plot showing predicted local RNA secondary structure conservation (Alidot -pf): mtn2 NC_003977M:1..3213NC_001344: Duck hepatitis B virusNC_001486: Heron hepatitis B virusNC_005888: Ross's goose hepatitis B virusNC_005890: Sheldgoose hepatitis B virusNC_005950: Snow goose hepatitis B virusNC_001344: Duck hepatitis B virusNC_005888: Ross's goose hepatitis B virusNC_005950: Snow goose hepatitis B virusProtein Class 2 (80-199): NC_001484: Ground squirrel hepatitis virus NC_003977M:3198..59Protein Class 2 (80-199): NC_001486: Heron hepatitis B virus NC_003977M:114..2840Protein Class 2 (80-199): NC_001719: Arctic ground squirrel hepatitis B virus NC_003977M:3198..24Protein Class 2 (80-199): NC_001896: Woolly monkey hepatitis B Virus NC_003977M:684..3205Protein Class 2 (80-199): NC_004107: Woodchuck hepatitis B virus NC_003977M:59..2779Protein Class 2 (80-199): NC_005888: Ross's goose hepatitis B virus NC_003977M:151..2840Protein Class 3 (50-79): NC_000858: Simian T-lymphotropic virus 1 NC_003977M:625..891Protein Class 3 (50-79): NC_001344: Duck hepatitis B virus NC_003977M:151..2834Protein Class 3 (50-79): NC_001436: Human T-lymphotropic virus 1 NC_003977M:625..891Protein Class 3 (50-79): NC_001484: Ground squirrel hepatitis virus NC_003977M:516..3215Protein Class 3 (50-79): NC_001486: Heron hepatitis B virus NC_003977M:2582..151Protein Class 3 (50-79): NC_001488: Human T-lymphotropic virus 2 NC_003977M:634..891Protein Class 3 (50-79): NC_001514: Woolly monkey sarcoma virus NC_003977M:625..852Protein Class 3 (50-79): NC_001550: Mason-Pfizer monkey virus NC_003977M:625..852Protein Class 3 (50-79): NC_001719: Arctic ground squirrel hepatitis B virus NC_003977M:1189..3215Protein Class 3 (50-79): NC_001815: Simian T-lymphotropic virus 2 NC_003977M:634..891Protein Class 3 (50-79): NC_001896: Woolly monkey hepatitis B Virus NC_003977M:489..1600Protein Class 3 (50-79): NC_003323: Primate T-lymphotropic virus 3 NC_003977M:625..891Protein Class 3 (50-79): NC_004107: Woodchuck hepatitis B virus NC_003977M:1843..1944Protein Class 3 (50-79): NC_005888: Ross's goose hepatitis B virus NC_003977M:2582..151Protein Class 3 (50-79): NC_005890: Sheldgoose hepatitis B virus NC_003977M:155..2840Protein Class 3 (50-79): NC_005950: Snow goose hepatitis B virus NC_003977M:151..2840
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