Hepatitis B Virus Regulatory Sequence Database (HBVRegDB)

           

Showing 3.027 kbp from NC_001344M:Duck hepatitis B virus, complete genome, modified for HBVRegDB. The data will take a while to load, positions 1 to 3,027

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recenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterDefinition line:  NC_001344M:1..3027ORFs (open reading frames).: ORF 0 NC_001344M:20..2533ORFs (open reading frames).: ORF 1 NC_001344M:693..1790ORFs (open reading frames).: ORF 2.end NC_001344M:1..411ORFs (open reading frames).: ORF 2.start NC_001344M:2524..3027TATA_box:  NC_001344M:2505..2511TATA_box:  NC_001344M:710..713primer_binding_site:  NC_001344M:2287..2301primer_binding_site:  NC_001344M:2541..2552primer_binding_site:  NC_001344M:2483..2494protein_binding_site:  NC_001344M:2185..2198protein_binding_site:  NC_001344M:948..9583-frame translation (forward): NC_001344M NC_001344M:1..3027Plot of conservation beyond what is expected from the aligned CDS (CDS-Plotcon): 15_nt_running-mean NC_001344M:1..3025Mountain plot showing predicted local RNA secondary structure conservation (Alidot -pf): mtn2 NC_001344M:1..3025NC_001484: Ground squirrel hepatitis virusNC_001719: Arctic ground squirrel hepatitis B virusNC_001896: Woolly monkey hepatitis B VirusNC_003977: Hepatitis B virusNC_004107: Woodchuck hepatitis B virusNC_001484: Ground squirrel hepatitis virusNC_001719: Arctic ground squirrel hepatitis B virusNC_001896: Woolly monkey hepatitis B VirusNC_003977: Hepatitis B virusNC_004107: Woodchuck hepatitis B virusProtein Class 2 (80-199): NC_001344: Duck hepatitis B virus NC_001344M:157..2Protein Class 2 (80-199): NC_001484: Ground squirrel hepatitis virus NC_001344M:49..2478Protein Class 2 (80-199): NC_001486: Heron hepatitis B virus NC_001344M:788..411Protein Class 2 (80-199): NC_001719: Arctic ground squirrel hepatitis B virus NC_001344M:22..2452Protein Class 2 (80-199): NC_001896: Woolly monkey hepatitis B Virus NC_001344M:28..2742Protein Class 2 (80-199): NC_003977: Hepatitis B virus NC_001344M:49..2742Protein Class 2 (80-199): NC_004107: Woodchuck hepatitis B virus NC_001344M:49..2452Protein Class 2 (80-199): NC_005888: Ross's goose hepatitis B virus NC_001344M:538..1514Protein Class 2 (80-199): NC_005890: Sheldgoose hepatitis B virus NC_001344M:1502..1272Protein Class 2 (80-199): NC_005950: Snow goose hepatitis B virus NC_001344M:1..1713Protein Class 3 (50-79): NC_001484: Ground squirrel hepatitis virus NC_001344M:49..2478Protein Class 3 (50-79): NC_001719: Arctic ground squirrel hepatitis B virus NC_001344M:2452..22Protein Class 3 (50-79): NC_001896: Woolly monkey hepatitis B Virus NC_001344M:1461..28Protein Class 3 (50-79): NC_003977: Hepatitis B virus NC_001344M:49..2742Protein Class 3 (50-79): NC_004107: Woodchuck hepatitis B virus NC_001344M:1668..49Protein Class 3 (50-79): NC_005888: Ross's goose hepatitis B virus NC_001344M:1578..1712Protein Class 3 (50-79): NC_005890: Sheldgoose hepatitis B virus NC_001344M:2045..2Protein Class 3 (50-79): NC_005950: Snow goose hepatitis B virus NC_001344M:2054..835
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- Similar virus nucleotide sequences (RefSeq Viral nucleotide, blastn)
 
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