Hepatitis B Virus Regulatory Sequence Database (HBVRegDB)

           

Showing 3.221 kbp from AM282986M:Hepatitis B virus (SUBTYPE ADW2), genotype A, modified for HBVRegDB. The data will take a while to load, positions 1 to 3,221

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recenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterrecenterDefinition line:  AM282986M:1..3221CDS: C.t01 AM282986M:1852..1911CDS: C.t01 AM282986M:1901..2458CDS: pre C/C.t01 AM282986M:1814..2458CDS: S1.t01 AM282986M:2854..3221CDS: S1.t01 AM282986M:1..835CDS: S2.t01 AM282986M:3211..3221CDS: S2.t01 AM282986M:155..835CDS: S2.t01 AM282986M:1..835CDS: X.t01 AM282986M:1374..1838ORFs (open reading frames).: ORF 0.end AM282986M:1..1620ORFs (open reading frames).: ORF 0.start AM282986M:2307..3221ORFs (open reading frames).: ORF 1 AM282986M:421..1620ORFs (open reading frames).: ORF 2.end AM282986M:1..832ORFs (open reading frames).: ORF 2.start AM282986M:2854..3221ORFs (open reading frames).: ORF 3 AM282986M:155..832ORFs (open reading frames).: ORF 4 AM282986M:1814..2455ORFs (open reading frames).: ORF 5 AM282986M:1374..1835regulatory_region: C
 AM282986M:1644..1666regulatory_region: Sequence:C AM282986M:1851..1904regulatory_region: Sequence:X AM282986M:1151..1684regulatory_region: Sequence:X AM282986M:1252..1582regulatory_region: Sequence:X AM282986M:1292..1321TATA_box: C
 AM282986M:1790..1794PolyA_site: C
 AM282986M:1930..1930primer_binding_site:  AM282986M:1590..1600primer_binding_site:  AM282986M:1824..1834protein_binding_site: X AM282986M:1136..1148protein_binding_site: X AM282986M:1088..1098protein_binding_site: X AM282986M:1026..1035protein_binding_site: X AM282986M:1188..1196protein_binding_site: X AM282986M:1121..1130protein_binding_site: X AM282986M:1081..1087protein_binding_site: X AM282986M:1150..1162protein_binding_site: X AM282986M:1220..1235protein_binding_site: X AM282986M:1275..1291enhancer: C
 AM282986M:1636..1744enhancer: S
 AM282986M:900..1310Promoter_prediction: C
 AM282986M:1403..1626Promoter_prediction: C
 AM282986M:1626..1817Promoter_prediction: C
 AM282986M:1520..1576Promoter_prediction: C
 AM282986M:1456..1519Promoter_prediction: C
 AM282986M:1403..1455Promoter_prediction: S1
 AM282986M:2716..2834Promoter_prediction: S2
 AM282986M:2966..3154Promoter_prediction: X
 AM282986M:950..13103-frame translation (forward): AM282986M AM282986M:1..3221Plot of conservation beyond what is expected from the aligned CDS (CDS-Plotcon): 15_nt_running-mean AM282986M:1..3219Mountain plot showing predicted local RNA secondary structure conservation (Alidot -pf): mtn2 AM282986M:1..3219NC_001344: Duck hepatitis B virusNC_001486: Heron hepatitis B virusNC_005888: Ross's goose hepatitis B virusNC_005890: Sheldgoose hepatitis B virusNC_005950: Snow goose hepatitis B virusNC_001344: Duck hepatitis B virusNC_005888: Ross's goose hepatitis B virusNC_005890: Sheldgoose hepatitis B virusNC_005950: Snow goose hepatitis B virusProtein Class 2 (80-199): NC_001344: Duck hepatitis B virus AM282986M:90..2840Protein Class 2 (80-199): NC_001484: Ground squirrel hepatitis virus AM282986M:3221..59Protein Class 2 (80-199): NC_001719: Arctic ground squirrel hepatitis B virus AM282986M:57..2842Protein Class 2 (80-199): NC_001896: Woolly monkey hepatitis B Virus AM282986M:880..8Protein Class 2 (80-199): NC_003977: Hepatitis B virus AM282986M:364..2704Protein Class 2 (80-199): NC_004107: Woodchuck hepatitis B virus AM282986M:11..2712Protein Class 2 (80-199): NC_005888: Ross's goose hepatitis B virus AM282986M:151..2846Protein Class 2 (80-199): NC_005890: Sheldgoose hepatitis B virus AM282986M:151..2846Protein Class 2 (80-199): NC_005950: Snow goose hepatitis B virus AM282986M:151..2846Protein Class 3 (50-79): NC_000858: Simian T-lymphotropic virus 1 AM282986M:625..891Protein Class 3 (50-79): NC_001344: Duck hepatitis B virus AM282986M:90..2588Protein Class 3 (50-79): NC_001436: Human T-lymphotropic virus 1 AM282986M:625..891Protein Class 3 (50-79): NC_001484: Ground squirrel hepatitis virus AM282986M:2843..1842Protein Class 3 (50-79): NC_001486: Heron hepatitis B virus AM282986M:151..2846Protein Class 3 (50-79): NC_001488: Human T-lymphotropic virus 2 AM282986M:634..891Protein Class 3 (50-79): NC_001514: Woolly monkey sarcoma virus AM282986M:625..852Protein Class 3 (50-79): NC_001719: Arctic ground squirrel hepatitis B virus AM282986M:1842..3221Protein Class 3 (50-79): NC_001815: Simian T-lymphotropic virus 2 AM282986M:634..1707 Protein Class 3 (50-79): NC_001896: Woolly monkey hepatitis B Virus AM282986M:3214..2602Protein Class 3 (50-79): NC_003323: Primate T-lymphotropic virus 3 AM282986M:625..891Protein Class 3 (50-79): NC_003977: Hepatitis B virus AM282986M:3146..3220Protein Class 3 (50-79): NC_004107: Woodchuck hepatitis B virus AM282986M:822..3204Protein Class 3 (50-79): NC_005888: Ross's goose hepatitis B virus AM282986M:151..2588Protein Class 3 (50-79): NC_005890: Sheldgoose hepatitis B virus AM282986M:155..2588Protein Class 3 (50-79): NC_005950: Snow goose hepatitis B virus AM282986M:155..2588
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